Detailed information of SNP:
|
SNP ID:
sf0329139425(Gbrowse)
Chromosome: chr03 Position: 29139425 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1288 | 96.89% | 3.11% |
| All Indica | 794 | 99.50% | 0.50% |
| All Japonica | 375 | 92.00% | 8.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 239 | 89.12% | 10.88% |
| Tropical Japonica | 79 | 98.73% | 1.27% |
| Japonica Intermediate | 57 | 94.74% | 5.26% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329139425 | G->A | INTERGENIC | None |