Detailed information of SNP:
|
SNP ID:
sf0329168955(Gbrowse)
Chromosome: chr03 Position: 29168955 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 53.40% | 46.60% |
| All Indica | 796 | 24.12% | 75.88% |
| All Japonica | 493 | 95.94% | 4.06% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 2.94% | 97.06% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 209 | 23.44% | 76.56% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329168955 | G->T | LOC_Os03g51030(LOC_Os03g51030.2) | UTR_5_PRIME |
| sf0329168955 | G->T | LOC_Os03g51030(LOC_Os03g51030.1) | UTR_5_PRIME |
| sf0329168955 | G->T | LOC_Os03g51030(LOC_Os03g51030.3) | UTR_5_PRIME |