Detailed information of SNP:
|
SNP ID:
sf0329176671(Gbrowse)
Chromosome: chr03 Position: 29176671 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 88.56% | 11.44% |
| All Indica | 779 | 81.39% | 18.61% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 37 | 86.49% | 13.51% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 198 | 45.96% | 54.04% |
| Indica Intermediate | 206 | 83.50% | 16.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329176671 | C->T | INTERGENIC | None |