Detailed information of SNP:
|
SNP ID:
sf0329183946(Gbrowse)
Chromosome: chr03 Position: 29183946 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 82.59% | 17.41% |
| All Indica | 799 | 76.85% | 23.15% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329183946 | G->A | INTERGENIC | None |