Detailed information of SNP:
|
SNP ID:
sf0329198515(Gbrowse)
Chromosome: chr03 Position: 29198515 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 90.23% | 9.77% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 492 | 73.17% | 26.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 63.36% | 36.64% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329198515 | A->T | LOC_Os03g51080(LOC_Os03g51080.1) | INTRON |