Detailed information of SNP:
|
SNP ID:
sf0329223879(Gbrowse)
Chromosome: chr03 Position: 29223879 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 81.82% | 18.18% |
| All Indica | 762 | 67.32% | 32.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 75.07% | 24.93% |
| Indica II | 207 | 76.33% | 23.67% |
| Indica Intermediate | 190 | 42.63% | 57.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329223879 | G->A | INTERGENIC | None |