Detailed information of SNP:
|
SNP ID:
sf0329300228(Gbrowse)
Chromosome: chr03 Position: 29300228 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 89.79% | 10.21% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 489 | 71.57% | 28.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 327 | 62.69% | 37.31% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329300228 | T->C | LOC_Os03g51230(LOC_Os03g51230.2) | INTRON |
| sf0329300228 | T->C | LOC_Os03g51230(LOC_Os03g51230.1) | INTRON |