Detailed information of SNP:
|
SNP ID:
sf0329361436(Gbrowse)
Chromosome: chr03 Position: 29361436 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 87.70% | 12.30% |
| All Indica | 747 | 88.09% | 11.91% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 358 | 90.78% | 9.22% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 177 | 74.58% | 25.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329361436 | A->G | INTERGENIC | None |