Detailed information of SNP:



SNP ID: sf0329549234(Gbrowse)

Chromosome: chr03

Position: 29549234
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 56.91% 43.09%
All Indica799 25.03% 74.97%
All Japonica497 99.60% 0.40%
Aus67 100.00% 0.00%
Indica I375 5.07% 94.93%
Indica II213 44.13% 55.87%
Indica Intermediate211 41.23% 58.77%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 78.05% 21.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0329549234 C->T INTERGENIC None