Detailed information of SNP:
|
SNP ID:
sf0329584558(Gbrowse)
Chromosome: chr03 Position: 29584558 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 80.50% | 19.50% |
| All Indica | 787 | 69.50% | 30.50% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 7 | 28.57% | 71.43% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 205 | 13.17% | 86.83% |
| Indica Intermediate | 207 | 72.95% | 27.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 7 | 85.71% | 14.29% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329584558 | G->A | INTERGENIC | None |