Detailed information of SNP:



SNP ID: sf0329584568(Gbrowse)

Chromosome: chr03

Position: 29584568
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1417 88.85% 11.15%
All Indica797 81.18% 18.82%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 98.67% 1.33%
Indica II212 45.75% 54.25%
Indica Intermediate210 85.71% 14.29%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0329584568 T->C INTERGENIC None