Detailed information of SNP:
SNP ID:
sf0329584568(Gbrowse)
Chromosome: chr03 Position: 29584568 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1417 | 88.85% | 11.15% |
All Indica | 797 | 81.18% | 18.82% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.67% | 1.33% |
Indica II | 212 | 45.75% | 54.25% |
Indica Intermediate | 210 | 85.71% | 14.29% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0329584568 | T->C | INTERGENIC | None |