Detailed information of SNP:
|
SNP ID:
sf0329584795(Gbrowse)
Chromosome: chr03 Position: 29584795 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 79.91% | 20.09% |
| All Indica | 790 | 67.59% | 32.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 45 | 84.44% | 15.56% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 206 | 12.14% | 87.86% |
| Indica Intermediate | 209 | 70.33% | 29.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329584795 | G->A | INTERGENIC | None |