Detailed information of SNP:
|
SNP ID:
sf0329595153(Gbrowse)
Chromosome: chr03 Position: 29595153 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.72% | 24.28% |
| All Indica | 797 | 69.01% | 30.99% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 10.85% | 89.15% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329595153 | G->A | LOC_Os03g51690(LOC_Os03g51690.1) | INTRON |
| sf0329595153 | G->A | LOC_Os03g51690(LOC_Os03g51690.3) | INTRON |
| sf0329595153 | G->A | LOC_Os03g51690(LOC_Os03g51690.2) | INTRON |