Detailed information of SNP:
|
SNP ID:
sf0329595798(Gbrowse)
Chromosome: chr03 Position: 29595798 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 75.88% | 24.12% |
| All Indica | 798 | 69.17% | 30.83% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 10.85% | 89.15% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329595798 | A->G | LOC_Os03g51690(LOC_Os03g51690.1) | INTRON |
| sf0329595798 | A->G | LOC_Os03g51690(LOC_Os03g51690.3) | INTRON |
| sf0329595798 | A->G | LOC_Os03g51690(LOC_Os03g51690.2) | INTRON |