Detailed information of SNP:
|
SNP ID:
sf0329599160(Gbrowse)
Chromosome: chr03 Position: 29599160 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 66.83% | 33.17% |
| All Indica | 798 | 41.98% | 58.02% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 6.13% | 93.87% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 51.43% | 48.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329599160 | C->T | LOC_Os03g51690(LOC_Os03g51690.1) | UTR_5_PRIME |
| sf0329599160 | C->T | LOC_Os03g51690(LOC_Os03g51690.2) | UTR_5_PRIME |