Detailed information of SNP:
|
SNP ID:
sf0329619543(Gbrowse)
Chromosome: chr03 Position: 29619543 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 98.45% | 1.55% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 495 | 95.56% | 4.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 93.39% | 6.61% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329619543 | C->A | LOC_Os03g51710(LOC_Os03g51710.2) | UTR_3_PRIME |
| sf0329619543 | C->A | LOC_Os03g51710(LOC_Os03g51710.1) | UTR_3_PRIME |
| sf0329619543 | C->A | LOC_Os03g51700(LOC_Os03g51700.2) | UTR_3_PRIME |
| sf0329619543 | C->A | LOC_Os03g51700(LOC_Os03g51700.1) | UTR_3_PRIME |