Detailed information of SNP:
|
SNP ID:
sf0329639906(Gbrowse)
Chromosome: chr03 Position: 29639906 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 95.17% | 4.83% |
| All Indica | 753 | 91.37% | 8.63% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 350 | 92.29% | 7.71% |
| Indica II | 200 | 85.50% | 14.50% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329639906 | G->A | LOC_Os03g51724(LOC_Os03g51724.1) | Synonymous |