Detailed information of SNP:
|
SNP ID:
sf0329643091(Gbrowse)
Chromosome: chr03 Position: 29643091 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 63.67% | 36.33% |
| All Indica | 795 | 46.92% | 53.08% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 63.20% | 36.80% |
| Indica II | 211 | 9.48% | 90.52% |
| Indica Intermediate | 209 | 55.50% | 44.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329643091 | C->A | LOC_Os03g51730(LOC_Os03g51730.1) | Non-Synonymous SNP |