Detailed information of SNP:
|
SNP ID:
sf0329696736(Gbrowse)
Chromosome: chr03 Position: 29696736 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 98.50% | 1.50% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 477 | 96.86% | 3.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 87.64% | 12.36% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329696736 | G->A | INTERGENIC | None |