Detailed information of SNP:
|
SNP ID:
sf0329849637(Gbrowse)
Chromosome: chr03 Position: 29849637 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 92.52% | 7.48% |
| All Indica | 721 | 96.81% | 3.19% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 339 | 97.64% | 2.36% |
| Indica II | 185 | 96.22% | 3.78% |
| Indica Intermediate | 197 | 95.94% | 4.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329849637 | A->G | INTERGENIC | None |