Detailed information of SNP:
|
SNP ID:
sf0329890199(Gbrowse)
Chromosome: chr03 Position: 29890199 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 54.12% | 45.88% |
| All Indica | 799 | 29.79% | 70.21% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 32.00% | 68.00% |
| Indica II | 213 | 36.62% | 63.38% |
| Indica Intermediate | 211 | 18.96% | 81.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329890199 | A->T | LOC_Os03g52090(LOC_Os03g52090.1) | INTRON |