Detailed information of SNP:
|
SNP ID:
sf0329912576(Gbrowse)
Chromosome: chr03 Position: 29912576 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 57.39% | 42.61% |
| All Indica | 770 | 25.84% | 74.16% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 361 | 22.71% | 77.29% |
| Indica II | 206 | 25.73% | 74.27% |
| Indica Intermediate | 203 | 31.53% | 68.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329912576 | A->G | LOC_Os03g52110(LOC_Os03g52110.1) | INTRON |