Detailed information of SNP:
|
SNP ID:
sf0329964656(Gbrowse)
Chromosome: chr03 Position: 29964656 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1299 | 93.15% | 6.85% |
| All Indica | 796 | 99.50% | 0.50% |
| All Japonica | 385 | 79.74% | 20.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 252 | 80.16% | 19.84% |
| Tropical Japonica | 84 | 85.71% | 14.29% |
| Japonica Intermediate | 49 | 67.35% | 32.65% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329964656 | T->C | LOC_Os03g52210(LOC_Os03g52210.1) | INTRON |