Detailed information of SNP:
|
SNP ID:
sf0329971767(Gbrowse)
Chromosome: chr03 Position: 29971767 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 97.21% | 2.79% |
| All Indica | 719 | 95.55% | 4.45% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 59 | 96.61% | 3.39% |
| Indica I | 328 | 95.73% | 4.27% |
| Indica II | 192 | 95.83% | 4.17% |
| Indica Intermediate | 199 | 94.97% | 5.03% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329971767 | C->T | INTERGENIC | None |