Detailed information of SNP:
|
SNP ID:
sf0330100270(Gbrowse)
Chromosome: chr03 Position: 30100270 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 55.15% | 44.85% |
| All Indica | 782 | 87.34% | 12.66% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 92.37% | 7.63% |
| Indica II | 208 | 78.37% | 21.63% |
| Indica Intermediate | 207 | 87.44% | 12.56% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330100270 | G->C | INTERGENIC | None |