Detailed information of SNP:
|
SNP ID:
sf0330224577(Gbrowse)
Chromosome: chr03 Position: 30224577 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 69.55% | 30.45% |
| All Indica | 780 | 46.67% | 53.33% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 54.82% | 45.18% |
| Indica II | 210 | 40.48% | 59.52% |
| Indica Intermediate | 207 | 38.65% | 61.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330224577 | G->A | LOC_Os03g52740(LOC_Os03g52740.1) | Non-Synonymous SNP |