Detailed information of SNP:
|
SNP ID:
sf0330228424(Gbrowse)
Chromosome: chr03 Position: 30228424 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 96.99% | 3.01% |
| All Indica | 786 | 98.09% | 1.91% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 60.34% | 39.66% |
| Indica I | 369 | 99.73% | 0.27% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330228424 | G->A | INTERGENIC | None |