Detailed information of SNP:
|
SNP ID:
sf0330330856(Gbrowse)
Chromosome: chr03 Position: 30330856 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1267 | 95.66% | 4.34% |
| All Indica | 685 | 93.72% | 6.28% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 41 | 75.61% | 24.39% |
| Indica I | 322 | 94.10% | 5.90% |
| Indica II | 184 | 92.39% | 7.61% |
| Indica Intermediate | 179 | 94.41% | 5.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 33 | 96.97% | 3.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330330856 | A->G | LOC_Os03g52900(LOC_Os03g52900.1) | INTRON |