Detailed information of SNP:
|
SNP ID:
sf0330340447(Gbrowse)
Chromosome: chr03 Position: 30340447 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 84.83% | 15.17% |
| All Indica | 797 | 82.69% | 17.31% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 85.03% | 14.97% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330340447 | T->C | INTERGENIC | None |