Detailed information of SNP:
|
SNP ID:
sf0330351322(Gbrowse)
Chromosome: chr03 Position: 30351322 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 50.35% | 49.65% |
| All Indica | 792 | 78.91% | 21.09% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 84.64% | 15.36% |
| Indica II | 211 | 74.41% | 25.59% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330351322 | C->T | INTERGENIC | None |