Detailed information of SNP:
|
SNP ID:
sf0330413820(Gbrowse)
Chromosome: chr03 Position: 30413820 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1260 | 96.27% | 3.73% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 343 | 89.50% | 10.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 234 | 93.59% | 6.41% |
| Tropical Japonica | 65 | 92.31% | 7.69% |
| Japonica Intermediate | 44 | 63.64% | 36.36% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330413820 | G->A | INTERGENIC | None |