Detailed information of SNP:
|
SNP ID:
sf0330445265(Gbrowse)
Chromosome: chr03 Position: 30445265 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1320 | 94.32% | 5.68% |
| All Indica | 704 | 89.77% | 10.23% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 323 | 82.66% | 17.34% |
| Indica II | 188 | 98.94% | 1.06% |
| Indica Intermediate | 193 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330445265 | C->T | LOC_Os03g53100(LOC_Os03g53100.1) | INTRON |