Detailed information of SNP:
|
SNP ID:
sf0330455945(Gbrowse)
Chromosome: chr03 Position: 30455945 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 97.42% | 2.58% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 48 | 37.50% | 62.50% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330455945 | T->C | INTERGENIC | None |