Detailed information of SNP:
|
SNP ID:
sf0330578599(Gbrowse)
Chromosome: chr03 Position: 30578599 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1285 | 88.33% | 11.67% |
| All Indica | 708 | 99.01% | 0.99% |
| All Japonica | 459 | 69.93% | 30.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 99.71% | 0.29% |
| Indica II | 194 | 97.42% | 2.58% |
| Indica Intermediate | 172 | 99.42% | 0.58% |
| Temperate Japonica | 309 | 61.49% | 38.51% |
| Tropical Japonica | 85 | 85.88% | 14.12% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330578599 | A->G | INTERGENIC | None |