Detailed information of SNP:
|
SNP ID:
sf0330584135(Gbrowse)
Chromosome: chr03 Position: 30584135 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1306 | 60.72% | 39.28% |
| All Indica | 741 | 42.11% | 57.89% |
| All Japonica | 446 | 84.75% | 15.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 338 | 29.88% | 70.12% |
| Indica II | 206 | 41.26% | 58.74% |
| Indica Intermediate | 197 | 63.96% | 36.04% |
| Temperate Japonica | 308 | 82.79% | 17.21% |
| Tropical Japonica | 81 | 90.12% | 9.88% |
| Japonica Intermediate | 57 | 87.72% | 12.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330584135 | G->A | INTERGENIC | None |