Detailed information of SNP:
|
SNP ID:
sf0330592776(Gbrowse)
Chromosome: chr03 Position: 30592776 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 82.64% | 17.36% |
| All Indica | 797 | 79.05% | 20.95% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 212 | 66.51% | 33.49% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330592776 | A->G | INTERGENIC | None |