Detailed information of SNP:
|
SNP ID:
sf0330595722(Gbrowse)
Chromosome: chr03 Position: 30595722 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 68.41% | 31.59% |
| All Indica | 784 | 54.34% | 45.66% |
| All Japonica | 457 | 87.53% | 12.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 48.78% | 51.22% |
| Indica II | 209 | 42.58% | 57.42% |
| Indica Intermediate | 206 | 76.21% | 23.79% |
| Temperate Japonica | 315 | 85.08% | 14.92% |
| Tropical Japonica | 84 | 92.86% | 7.14% |
| Japonica Intermediate | 58 | 93.10% | 6.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330595722 | C->T | INTERGENIC | None |