Detailed information of SNP:
|
SNP ID:
sf0330646833(Gbrowse)
Chromosome: chr03 Position: 30646833 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1324 | 96.30% | 3.70% |
| All Indica | 756 | 93.65% | 6.35% |
| All Japonica | 447 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 94.27% | 5.73% |
| Indica II | 207 | 91.79% | 8.21% |
| Indica Intermediate | 200 | 94.50% | 5.50% |
| Temperate Japonica | 300 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330646833 | C->T | LOC_Os03g53430(LOC_Os03g53430.1) | INTRON |