Detailed information of SNP:
|
SNP ID:
sf0330663485(Gbrowse)
Chromosome: chr03 Position: 30663485 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 94.30% | 5.70% |
| All Indica | 794 | 98.99% | 1.01% |
| All Japonica | 419 | 84.01% | 15.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 261 | 75.86% | 24.14% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330663485 | A->G | INTERGENIC | None |