Detailed information of SNP:
|
SNP ID:
sf0330702336(Gbrowse)
Chromosome: chr03 Position: 30702336 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 89.36% | 10.64% |
| All Indica | 796 | 99.37% | 0.63% |
| All Japonica | 481 | 70.48% | 29.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 56.52% | 43.48% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330702336 | A->G | INTERGENIC | None |