Detailed information of SNP:
|
SNP ID:
sf0330715673(Gbrowse)
Chromosome: chr03 Position: 30715673 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1226 | 96.25% | 3.75% |
| All Indica | 732 | 100.00% | 0.00% |
| All Japonica | 379 | 88.13% | 11.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 100.00% | 0.00% |
| Indica II | 176 | 100.00% | 0.00% |
| Indica Intermediate | 195 | 100.00% | 0.00% |
| Temperate Japonica | 268 | 99.25% | 0.75% |
| Tropical Japonica | 71 | 40.85% | 59.15% |
| Japonica Intermediate | 40 | 97.50% | 2.50% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330715673 | C->T | INTERGENIC | None |