Detailed information of SNP:
|
SNP ID:
sf0330731516(Gbrowse)
Chromosome: chr03 Position: 30731516 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 95.77% | 4.23% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330731516 | G->A | LOC_Os03g53600(LOC_Os03g53600.3) | Non-Synonymous SNP |
| sf0330731516 | G->A | LOC_Os03g53600(LOC_Os03g53600.2) | Non-Synonymous SNP |
| sf0330731516 | G->A | LOC_Os03g53600(LOC_Os03g53600.1) | Non-Synonymous SNP |