Detailed information of SNP:
|
SNP ID:
sf0330751295(Gbrowse)
Chromosome: chr03 Position: 30751295 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 61.13% | 38.87% |
| All Indica | 793 | 85.25% | 14.75% |
| All Japonica | 495 | 18.99% | 81.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 209 | 63.16% | 36.84% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330751295 | T->G | INTERGENIC | None |