Detailed information of SNP:
|
SNP ID:
sf0330772029(Gbrowse)
Chromosome: chr03 Position: 30772029 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.06% | 48.94% |
| All Indica | 798 | 15.29% | 84.71% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 2.13% | 97.87% |
| Indica II | 212 | 37.74% | 62.26% |
| Indica Intermediate | 211 | 16.11% | 83.89% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330772029 | A->G | LOC_Os03g53670(LOC_Os03g53670.2) | Non-Synonymous SNP |
| sf0330772029 | A->G | LOC_Os03g53670(LOC_Os03g53670.1) | Non-Synonymous SNP |