Detailed information of SNP:
|
SNP ID:
sf0330799156(Gbrowse)
Chromosome: chr03 Position: 30799156 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 97.60% | 2.40% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 93.35% | 6.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330799156 | C->T | LOC_Os03g53720(LOC_Os03g53720.1) | INTRON |
| sf0330799156 | C->T | LOC_Os03g53720(LOC_Os03g53720.2) | UTR_3_PRIME |