Detailed information of SNP:
|
SNP ID:
sf0330817424(Gbrowse)
Chromosome: chr03 Position: 30817424 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 55.58% | 44.42% |
| All Indica | 797 | 30.87% | 69.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 17.65% | 82.35% |
| Indica II | 212 | 53.77% | 46.23% |
| Indica Intermediate | 211 | 31.28% | 68.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330817424 | G->A | INTERGENIC | None |