Detailed information of SNP:
|
SNP ID:
sf0330817428(Gbrowse)
Chromosome: chr03 Position: 30817428 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.02% | 45.98% |
| All Indica | 798 | 85.09% | 14.91% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330817428 | A->G | INTERGENIC | None |