Detailed information of SNP:
|
SNP ID:
sf0330827800(Gbrowse)
Chromosome: chr03 Position: 30827800 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 91.37% | 8.63% |
| All Indica | 794 | 99.50% | 0.50% |
| All Japonica | 474 | 75.95% | 24.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 64.01% | 35.99% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330827800 | G->A | INTERGENIC | None |