Detailed information of SNP:
|
SNP ID:
sf0330832025(Gbrowse)
Chromosome: chr03 Position: 30832025 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 54.90% | 45.10% |
| All Indica | 799 | 85.98% | 14.02% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330832025 | A->G | INTERGENIC | None |