Detailed information of SNP:
|
SNP ID:
sf0330843067(Gbrowse)
Chromosome: chr03 Position: 30843067 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1259 | 89.99% | 10.01% |
| All Indica | 786 | 89.82% | 10.18% |
| All Japonica | 355 | 92.11% | 7.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 201 | 72.14% | 27.86% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 254 | 96.46% | 3.54% |
| Tropical Japonica | 54 | 94.44% | 5.56% |
| Japonica Intermediate | 47 | 65.96% | 34.04% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330843067 | A->C | INTERGENIC | None |